Image Analysis on Bacteria Time-Lapse Movies

This study has been developed a methodology for identifying accurately the boundaries of individual bacterial cells and tracking them from frame to frame so as to construct the cells’ genealogy (bacterial cell segmentation and lineage tree construction) even in large-size microbial communities where there is great difficulty in identifying the individual cell boundaries

Hybrid forecast and control chain for operation of flexibility assets in micro-grids

Studies on forecasting and optimal exploitation of renewable resources (especially within microgrids) were already introduced in the past. However, in several research papers, the constraints regarding integration within real applications were relaxed, i.e., this kind of research provides impractical solutions, although they are very complex. In this paper, the computational components (such as photovoltaic and load forecasting, and resource scheduling and optimization) are brought together into a practical implementation, introducing an automated system through a chain of independent services aiming to allow forecasting, optimization, and control. Encountered challenges may provide a valuable indication to make ground with this design, especially in cases for which the trade-off between sophistication and available resources should be rather considered. The research work was conducted to identify the requirements for controlling a set of flexibility assets—namely, electrochemical battery storage system and electric car charging station—for a semicommercial use-case by minimizing the operational energy costs for the microgrid considering static and dynamic parameters of the assets

Design and implementation of an interoperable architecture for integrating building legacy systems into scalable energy management systems

The building sector is responsible for a significant amount of energy consumption and greenhouse gas (GHG) emissions. Thus, the monitoring, control and optimization of energy consumption in buildings will play a critical role in the coming years in improving energy efficiency in the building sector and in reducing greenhouse gas emissions. However, while there are a significant number of studies on how to make buildings smarter and manage energy through smart devices, there is a need for more research on integrating buildings with legacy equipment and systems. It is therefore vital to define mechanisms to improve the use of energy efficiency in existing buildings. This study proposes a new architecture (PHOENIX architecture) for integrating legacy building systems into scalable energy management systems with focus also on user comfort in the concept of interoperability layers. This interoperable and intelligent architecture relies on Artificial Intelligence/Machine Learning (AI/ML) and Internet of Things (IoT) technologies to increase building efficiency, grid flexibility and occupant well-being. To validate the architecture and demonstrate the impact and replication potential of the proposed solution, five demonstration pilots have been utilized across Europe. As a result, by implementing the proposed architecture in the pilot sites, 30 apartments and four commercial buildings with more than 400 devices have been integrated into the architecture and have been communicating successfully. In addition, six Trials were performed in a commercial building and five key performance indicators (KPIs) were measured in order to evaluate the robust operation of the architecture. Work is still ongoing for the trials and the KPIs’ analysis after the implementation of PHOENIX architecture at the rest of the pilot sites

Self-medication with antibiotics in rural population in Greece: a cross-sectional multicenter study

<p>Abstract</p> <p>Background</p> <p>Self-medication is an important driver of antimicrobial overuse as well as a worldwide problem. The aim of the present study was to estimate the use of antibiotics, without medical prescription, in a sample of rural population presenting in primary care in southern Greece.</p> <p>Methods</p> <p>The study included data from 1,139 randomly selected adults (545 men/594 women, mean age ± SD: 56.2 ± 19.8 years), who visited the 6 rural Health Centres of southern Greece, between November 2009 and January 2010. The eligible participants were sought out on a one-to-one basis and asked to answer an anonymous questionnaire.</p> <p>Results</p> <p>Use of antibiotics within the past 12 months was reported by 888 participants (77.9%). 508 individuals (44.6%) reported that they had received antibiotics without medical prescription at least one time. The major source of self-medication was the pharmacy without prescription (76.2%). The antibiotics most frequently used for self-medication were amoxicillin (18.3%), amoxicillin/clavulanic acid (15.4%), cefaclor (9.7%), cefuroxim (7.9%), cefprozil (4.7%) and ciprofloxacin (2.3%). Fever (41.2%), common cold (32.0%) and sore throat (20.6%) were the most frequent indications for the use of self-medicated antibiotics.</p> <p>Conclusion</p> <p>In Greece, despite the open and rapid access to primary care services, it appears that a high proportion of rural adult population use antibiotics without medical prescription preferably for fever and common cold.</p

Texture classification of proteins using support vector machines and bio-inspired metaheuristics

6th International Joint Conference, BIOSTEC 2013, Barcelona, Spain, February 11-14, 2013[Abstract] In this paper, a novel classification method of two-dimensional polyacrylamide gel electrophoresis images is presented. Such a method uses textural features obtained by means of a feature selection process for whose implementation we compare Genetic Algorithms and Particle Swarm Optimization. Then, the selected features, among which the most decisive and representative ones appear to be those related to the second order co-occurrence matrix, are used as inputs for a Support Vector Machine. The accuracy of the proposed method is around 94 %, a statistically better performance than the classification based on the entire feature set. This classification step can be very useful for discarding over-segmented areas after a protein segmentation or identification process

Protein spot detection and quantification in 2-DE gel images using machine-learning methods

Two-dimensional gel electrophoresis (2-DE) is the most established protein separation method used in expression proteomics. Despite the existence of sophisticated software tools, 2-DE gel image analysis still remains a serious bottleneck. The low accuracies of commercial software packages and the extensive manual calibration that they often require for acceptable results show that we are far from achieving the goal of a fully automated and reliable, high-throughput gel processing system. We present a novel spot detection and quantification methodology which draws heavily from unsupervised machine-learning methods. Using the proposed hierarchical machine learning-based segmentation methodology reduces both the number of faint spots missed (improves sensitivity) and the number of extraneous spots introduced (improves precision). The detection and quantification performance has been thoroughly evaluated and is shown to compare favorably (higher F-measure) to a commercially available software package (PDQuest). The whole image analysis pipeline that we have developed is fully automated and can be used for high-throughput proteomics analysis since it does not require any manual intervention for recalibration every time a new 2-DE gel image is to be analyzed. Furthermore, it can be easily parallelized for high performance and also applied without any modification to prealigned group average gels. © 2011 WILEY-VCH Verlag GmbH &amp; Co. KGaA, Weinheim

High-throughput analysis of in-vitro LFP electrophysiological signals: a validated workflow/software package

Synchronized brain activity in the form of alternating epochs of massive persistent network activity and periods of generalized neural silence, has been extensively studied as a fundamental form of circuit dynamics, important for many cognitive functions including short-term memory, memory consolidation, or attentional modulation. A key element in such studies is the accurate determination of the timing and duration of those network events. The local field potential (LFP) is a particularly attractive method for recording network activity, because it allows for long and stable recordings from multiple sites, allowing researchers to estimate the functional connectivity of local networks. Here, we present a computational method for the automatic detection and quantification of in-vitro LFP events, aiming to overcome the limitations of current approaches (e.g. slow analysis speed, arbitrary threshold-based detection and lack of reproducibility across and within experiments). The developed method is based on the implementation of established signal processing and machine learning approaches, is fully automated and depends solely on the data. In addition, it is fast, highly efficient and reproducible. The performance of the software is compared against semi-manual analysis and validated by verification of prior biological knowledge

High-throughput analysis of in-vitro LFP electrophysiological signals: a validated workflow/software package

Synchronized brain activity in the form of alternating epochs of massive persistent network activity and periods of generalized neural silence, has been extensively studied as a fundamental form of circuit dynamics, important for many cognitive functions including short-term memory, memory consolidation, or attentional modulation. A key element in such studies is the accurate determination of the timing and duration of those network events. The local field potential (LFP) is a particularly attractive method for recording network activity, because it allows for long and stable recordings from multiple sites, allowing researchers to estimate the functional connectivity of local networks. Here, we present a computational method for the automatic detection and quantification of in-vitro LFP events, aiming to overcome the limitations of current approaches (e.g. slow analysis speed, arbitrary threshold-based detection and lack of reproducibility across and within experiments). The developed method is based on the implementation of established signal processing and machine learning approaches, is fully automated and depends solely on the data. In addition, it is fast, highly efficient and reproducible. The performance of the software is compared against semi-manual analysis and validated by verification of prior biological knowledge